PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11130.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 340aa    MW: 38638.3 Da    PI: 9.3439
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11130.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.96.2e-26199248352
        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl
  MLOC_11130.1 199 ASITLVDIAPYFHLPIREASRALKIGVSILKKKCRQYGIPRWPHRKIKSL 248
                   78**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151920.043183268IPR003035RWP-RK domain
PfamPF020429.5E-21200248IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDAAVTTLSA LAVFASTLHQ GAVRSVHGYR VVGVGGGRLW DRWVEREFAF SPSSCREVPL  60
PAAAPRILPV EWRGRPAYRE GQVLGAWRCV LAFDSLVAAA LPPTPPPMLC PFRNPGLVCV  120
PSLYSDLYMV FQFQRFQQAP QLVQRDSDEK PTRLDAEDNK TSDEVEEESG SDSDEDPQSG  180
EELSAQVERR RRAKKQHIAS ITLVDIAPYF HLPIREASRA LKIGVSILKK KCRQYGIPRW  240
PHRKIKSLDS LISDLEFVMD DTDGDAVQKE TCKQREKEKK KEEKDKQNAI QALAKRKRLL  300
ESEKETIQQK PALDLMAETK LFREDVFKRR YRAKRLPGQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278297KKKEEKDKQNAIQALAKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3723870.0AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158590.10.0protein RKD5-like
TrEMBLF2E8B30.0F2E8B3_HORVV; Predicted protein (Fragment)
STRINGTraes_2AL_39432DCB1.20.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-37RWP-RK domain-containing protein