PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_11130.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 212aa MW: 24765.1 Da PI: 9.6021

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_11130.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83	2.9e-26	71	120	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl MLOC_11130.3 71 ASITLVDIAPYFHLPIREASRALKIGVSILKKKCRQYGIPRWPHRKIKSL 120 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	20.043	55	140	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-21	72	120	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVFQFQRFQQ APQLVQRDSD EKPTRLDAED NKTSDEVEEE SGSDSDEDPQ SGEELSAQVE 60 RRRRAKKQHI ASITLVDIAP YFHLPIREAS RALKIGVSIL KKKCRQYGIP RWPHRKIKSL 120 DSLISDLEFV MDDTDGDAVQ KETCKQREKE KKKEEKDKQN AIQALAKRKR LLESEKETIQ 180 QKPALDLMAE TKLFREDVFK RRYRAKRLPG QL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	169	KKKEEKDKQNAIQALAKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_11130.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372387	0.0	AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158590.1	1e-117	protein RKD5-like
TrEMBL	A0A287J116	1e-150	A0A287J116_HORVV; Uncharacterized protein
STRING	MLOC_11130.2	1e-148	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-33	RWP-RK domain-containing protein