PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11457.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 123aa    MW: 13676.7 Da    PI: 8.6968
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11457.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73.1e-152966340
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                  +++C+Ckks+Clk+YC Cfa+g++Cse C C+ C Nk 
  MLOC_11457.2 29 CRTCSCKKSRCLKLYCVCFASGSHCSELCGCDPCYNKP 66
                  789*********************************96 PP
2TCR253.8e-08105123422
           TCR   4 kgCnCkkskClkkYCeCfa 22 
                   ++C+Ckks ClkkYC+C++
  MLOC_11457.2 105 RKCTCKKSGCLKKYCDCYQ 123
                   79****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-92768IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163421.96928123IPR005172CRC domain
PfamPF036384.7E-113065IPR005172CRC domain
PfamPF036383.0E-5105123IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
VWTAVSPPAE ANGSSDRRKK RKAEDGEGCR TCSCKKSRCL KLYCVCFASG SHCSELCGCD  60
PCYNKPIHGV QQNTPPGLPL QVVRTAEAGQ NSAEFARYQM DFFRRKCTCK KSGCLKKYCD  120
CYQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11457.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754080.0AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189112.17e-83protein tesmin/TSO1-like CXC 5
TrEMBLA0A287QE893e-86A0A287QE89_HORVV; Uncharacterized protein
TrEMBLF2EGY15e-85F2EGY1_HORVV; Predicted protein
STRINGMLOC_11457.13e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-26TESMIN/TSO1-like CXC 2