PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_11474.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

M-type_MADS

Protein Properties

Length: 104aa MW: 11826 Da PI: 10.6231

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_11474.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.4	1.6e-22	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+s rqvt+skRr gilKKA+ELS+LCd++ +++fs++g+ MLOC_11474.4 10 KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGR 53 679**************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.6	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.5E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MGRVKLKIKK LENSSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP SGRPTICIGD 60 KSPIDEVIAK YAQQTPQERA KRKLESLEAL KKTFKKLDHD VNIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-14	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_11474.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373111	1e-174	AK373111.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021H04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192405.1	6e-64	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	3e-50	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A287NR03	2e-68	A0A287NR03_HORVV; Uncharacterized protein
STRING	MLOC_11474.1	1e-66	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-42	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]