PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11474.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9245.97 Da    PI: 10.7606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11474.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.7e-231053245
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  + en+s rqvt+skRr gilKKA+ELS+LCd++  +++fs++g+
  MLOC_11474.5 10 KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGR 53
                  679**************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.6153IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-25280IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGRVKLKIKK LENSSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP SGRPTICIGD  60
KSPIDEVIAK YAQQTPQERA KR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11474.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731111e-135AK373111.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192405.19e-50agamous-like MADS-box protein AGL65
SwissprotQ1PFA41e-35AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A287NR037e-52A0A287NR03_HORVV; Uncharacterized protein
TrEMBLA0A287NR069e-52A0A287NR06_HORVV; Uncharacterized protein
STRINGTRIUR3_33223-P12e-49(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.12e-28AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]