PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_11494.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

VOZ

Protein Properties

Length: 404aa MW: 44846.5 Da PI: 5.6244

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_11494.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	417.4	2.4e-128	71	288	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 p+ps++lgpkcalwdc rp++gse++qdyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lf+al akvqgk+vgip+cegaat+kspwna+elf MLOC_11494.1 71 PSPSQYLGPKCALWDCGRPVRGSEECQDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFDALCAKVQGKNVGIPVCEGAATSKSPWNAPELF 167 89************************************9799************************************************* PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdek 193 dlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+fgglk+syymdpqpss++ewhl+eyein++++lalyrle+k +d+k MLOC_11494.1 168 DLSLLEGESLREWLFFDRPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKKSYYMDPQPSSTYEWHLFEYEINDSNTLALYRLEFKASDAK 264 ********************************************************************************************* PP VOZ 194 ksakgkvskdsladlqkklgrlta 217 +s+k+k+ ++sl+++q+++++l+a MLOC_11494.1 265 RSVKSKLGSSSLNEIQQQMVKLSA 288 ********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MYYIDHELSI DDFLHGSNPD GLNNLQGTGQ PEHQQFNLQH SSNSYADANN SVQSTGDVFF 60 HMSDLLTTVC PSPSQYLGPK CALWDCGRPV RGSEECQDYC NPYHAGLALN DDGLLGTRPV 120 MRPRGIDLKD GPLFDALCAK VQGKNVGIPV CEGAATSKSP WNAPELFDLS LLEGESLREW 180 LFFDRPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMKDFG GLKKSYYMDP QPSSTYEWHL 240 FEYEINDSNT LALYRLEFKA SDAKRSVKSK LGSSSLNEIQ QQMVKLSANS PVDSKRGARS 300 KTKASQKDTT VNTYPALKAT NQAGASNAYE TVPLNIPNQA NASNAYQTVA PNIPNQDSTS 360 NAYEDSSQVD PMSFLNDNVV YGPHLPYGYP DGKGDFYWNP TSGT

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MYYIDHELSI DDFLHGSNPD GLNNLQGTGQ PEHQQFNLQH SSNSYADANN SVQSTGDVFF  60
HMSDLLTTVC PSPSQYLGPK CALWDCGRPV RGSEECQDYC NPYHAGLALN DDGLLGTRPV  120
MRPRGIDLKD GPLFDALCAK VQGKNVGIPV CEGAATSKSP WNAPELFDLS LLEGESLREW  180
LFFDRPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMKDFG GLKKSYYMDP QPSSTYEWHL  240
FEYEINDSNT LALYRLEFKA SDAKRSVKSK LGSSSLNEIQ QQMVKLSANS PVDSKRGARS  300
KTKASQKDTT VNTYPALKAT NQAGASNAYE TVPLNIPNQA NASNAYQTVA PNIPNQDSTS  360
NAYEDSSQVD PMSFLNDNVV YGPHLPYGYP DGKGDFYWNP TSGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_11494.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376294	0.0	AK376294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120B09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158802.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-115	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A287GB91	0.0	A0A287GB91_HORVV; Uncharacterized protein
TrEMBL	A0A287GBB7	0.0	A0A287GBB7_HORVV; Uncharacterized protein
TrEMBL	F2EJG7	0.0	F2EJG7_HORVV; Predicted protein
STRING	MLOC_11494.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-111	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]