PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11547.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YC
Protein Properties Length: 255aa    MW: 28088.4 Da    PI: 6.1676
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11547.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC62.96.2e-207861998
         NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                  +++P arikki++adedv +i+  +Pvl+s+a elf+ +l  rs+  + ++  +tl+   ++++v+r   fdfl++iv +
  MLOC_11547.2  7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 86
                  579*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-26372IPR009072Histone-fold
SuperFamilySSF471131.01E-20391IPR009072Histone-fold
PfamPF008082.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRS YKITLQSGAK  60
TLNSFHLKQC VKRYSSFDFL TEIVNKVPDL GGGESCGDER GLPRRRKFSN GSDPENEEPR  120
SSKMPIRNLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP  180
ETNRGNESIP QSSHPVAEAP SAATPAVTSK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH  240
LTVQVDEEED YDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106PRRRK
2135144RGRGRGRGRG
3135145RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11547.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2489870.0AK248987.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf20l20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156751.11e-163dr1-associated corepressor-like
TrEMBLM0UJL00.0M0UJL0_HORVV; Uncharacterized protein
STRINGMLOC_11547.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-51nuclear factor Y, subunit C11