PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11547.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YC
Protein Properties Length: 236aa    MW: 25847.7 Da    PI: 4.9362
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11547.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.71.2e-131693098
         NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                  ++adedv +i+  +Pvl+s+a elf+ +l  rs+  + ++  +tl+   ++++v+r   fdfl++iv +
  MLOC_11547.3  1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 69
                  899**************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.3E-19171IPR009072Histone-fold
PfamPF008082.9E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.6E-18168IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRSYKITLQS GAKTLNSFHL KQCVKRYSSF  60
DFLTEIVNKV PDLGGGESCG DERGLPRRRK FSNGSDPENE EPRSSKMPIR NLNTSPRGRG  120
RGRGRGRGRP PTKRKEIGYV QFEDESSMFA EQSEPLPGDE IVPETNRGNE SIPQSSHPVA  180
EAPSAATPAV TSKVEEASTN HQPDWPMPDA IGGIGVGPSS FGHLTVQVDE EEDYDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-151542174Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589PRRRK
2118127RGRGRGRGRG
3118128RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11547.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2489870.0AK248987.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf20l20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156751.11e-150dr1-associated corepressor-like
TrEMBLA0A287NS871e-173A0A287NS87_HORVV; Uncharacterized protein
STRINGMLOC_11547.21e-173(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-39nuclear factor Y, subunit C11