PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11626.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 155aa    MW: 16666.9 Da    PI: 10.6491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11626.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000514668123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  Cg++F +   L  H  +H
  MLOC_11626.1 46 YECRTCGRRFATFQALGGHRTSH 68
                  99**********99998888777 PP
2zf-C2H217.98.4e-0696118123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg+ F+++  L  H+r H
  MLOC_11626.1  96 HRCGTCGQAFPTRQALGGHMRGH 118
                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-104570IPR007087Zinc finger, C2H2
SMARTSM003550.224668IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.77E-846118No hitNo description
PROSITE profilePS5015710.9494673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM003550.03396118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5196123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-496120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-796120IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDVASADTRA PITFIELLRK LSSPAASSRV IGKNKWVQLQ AGGGAYECRT CGRRFATFQA  60
LGGHRTSHKR PRVRAHGLDL LLGARPGKAT APVQLHRCGT CGQAFPTRQA LGGHMRGHSQ  120
AVPAATWTET ATWSSTSCLS GQDDDADWPT LIQFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152686.11e-67zinc finger protein ZAT11-like
TrEMBLA0A3B6HWH62e-67A0A3B6HWH6_WHEAT; Uncharacterized protein
TrEMBLA0A446R0F42e-67A0A446R0F4_TRITD; Uncharacterized protein
STRINGMLOC_11626.11e-110(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-21C2H2 family protein