PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11665.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 199aa    MW: 22188.5 Da    PI: 6.5086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11665.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-051035123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  + Cp   Cg++F++ s L+ H r  H
  MLOC_11665.2 10 HMCPypECGRRFTQESKLRAHFRAqH 35
                  689999***************99877 PP
2zf-C2H217.89.1e-067297123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  y+Cp   Cgk + + + L+ H+++ H
  MLOC_11665.2 72 YVCPydGCGKAYIHEYKLNLHLKKeH 97
                  9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00771035IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-81032IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0321035IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-61235No hitNo description
Gene3DG3DSA:3.30.160.602.0E-96494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-66794No hitNo description
PROSITE profilePS501579.68172102IPR007087Zinc finger, C2H2
SMARTSM003550.00167297IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKFGA QNLGGPVMNP GGPHNTLKSP  60
VTPPVPSADR PYVCPYDGCG KAYIHEYKLN LHLKKEHPNH YSNAGAQAGS SRGTVSKNSR  120
RSKPNLMTSM PLAKIPKRNG YTVPSSSVVT VPEEHQWPRK VLYEADSEET EEEGDNMEEG  180
GLGYRAGSGD DDDETEEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11665.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569600.0AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.11e-105uncharacterized zinc finger protein At4g06634 isoform X1
TrEMBLF2CZA41e-125F2CZA4_HORVV; Predicted protein
STRINGMLOC_11665.61e-128(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-30C2H2 family protein