PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11678.1
Common Namekn1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 349aa    MW: 38574.5 Da    PI: 6.8027
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11678.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-102753102055
                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  MLOC_11678.1 275 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 310
                   4679*****************************885 PP
2ELK37.64.6e-13230251122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   +LK qLl+KYsgyL+sL+qEFs
  MLOC_11678.1 230 DLKYQLLKKYSGYLSSLRQEFS 251
                   69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-2086130IPR005540KNOX1
PfamPF037902.2E-2087128IPR005540KNOX1
SMARTSM012567.1E-29134185IPR005541KNOX2
PfamPF037912.7E-24140184IPR005541KNOX2
PfamPF037895.6E-10230251IPR005539ELK domain
PROSITE profilePS5121311.453230250IPR005539ELK domain
SMARTSM011883.3E-7230251IPR005539ELK domain
PROSITE profilePS5007112.892250313IPR001356Homeobox domain
SuperFamilySSF466891.24E-19251324IPR009057Homeodomain-like
SMARTSM003894.4E-13252317IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-28255314IPR009057Homeodomain-like
CDDcd000862.96E-13262314No hitNo description
PfamPF059209.7E-17270309IPR008422Homeobox KN domain
PROSITE patternPS000270288311IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDRSSFGNLA AGGGGSSSSK SSPSFLQLQP LSTTTVAAGP GPMGGTYYGT PLALHQGAAA  60
AGSSQSPYQF HHHKSSVGEI SQAEAEAIKT KIMAHPQYTA LLVAYLDCQK VGAPPDVLER  120
LTAMAAKLDA HTPGRLHEAR DPELDQFMEA YCNMLAKYRE ELTRPIEEAM EFLKRVEAQL  180
DSITGGGHGS APLSLAAGKY EGVGSSEDDM DASGRENEPP EIDPRAEDKD LKYQLLKKYS  240
GYLSSLRQEF SKKKKKGKLP KEARQKLLHW WELHYKWPYP SETEKIALAE STGLDQKQIN  300
NWFINQRKRH WKPSEDMPFV MMEGFHPQNA AALYMDGQFM ADGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440450.0AF544045.1 Hordeum vulgare knotted 1 (kn1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180358.10.0homeobox protein knotted-1-like 12
SwissprotO650341e-168KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-168KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLM0UK550.0M0UK55_HORVV; Uncharacterized protein
TrEMBLQ717U90.0Q717U9_HORVU; Knotted 1
STRINGMLOC_11678.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-105KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Lin J,M
    Structure and development of epiphylly in knox-transgenic tobacco.
    Planta, 2002. 214(4): p. 521-5
    [PMID:11925035]
  6. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  7. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]