PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12054.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 219aa MW: 25439.1 Da PI: 9.7572

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12054.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.9	1.8e-13	128	207	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++l +p +f +++ ++++ ++ l de+ ++++++ + k+++ l +GW++F+ ++L +gD++vF+l++r++f +v ++r+ MLOC_12054.1 128 TGSWLKIPVQFKRRYL--PPCDEMIFLVDEEDGEFQMRY--NAKGCG--LCTGWNSFAIGQKLADGDSLVFQLVQRTKF--KVYIIRA 207 44579*****9996..45999************..888877..888********************99999..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-20	111	208	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-18	111	208	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.60E-16	116	206	No hit	No description
PROSITE profile	PS50863	10.278	117	208	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-11	118	208	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-12	129	207	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAQPNSYEEQ RRRQVQENKR KLDELRLHRL SAAVHEAAVK PMPTKELKLR CIRAPPAPTR 60 RSGRVASLPD QPDYRERKAP RGLPQPPDRV YATDEARDYA FSKAEELKNL LSSDHPSFIR 120 PVTHLYATGS WLKIPVQFKR RYLPPCDEMI FLVDEEDGEF QMRYNAKGCG LCTGWNSFAI 180 GQKLADGDSL VFQLVQRTKF KVYIIRASSY YENEHCRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12054.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	2e-40	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175454.1	1e-115	B3 domain-containing protein Os06g0194400-like
Refseq	XP_020175455.1	1e-115	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-77	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	M0ULJ8	1e-162	M0ULJ8_HORVV; Uncharacterized protein
STRING	MLOC_12054.1	1e-163	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-42	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]