PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12054.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 96aa MW: 11393.2 Da PI: 7.9157

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12054.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.2	3.1e-13	10	84	17	99
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f +++ ++++ ++ l de+ ++++++ + k+++ l +GW++F+ ++L +gD++vF+l++r++f +v ++r+ MLOC_12054.4 10 KIPVQFKRRYL--PPCDEMIFLVDEEDGEFQMRY--NAKGCG--LCTGWNSFAIGQKLADGDSLVFQLVQRTKF--KVYIIRA 84 59999999995..45899**************..888877..888********************99999..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.278	1	85	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-5	2	85	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.2E-15	10	85	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-16	10	85	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-12	11	83	No hit	No description
Pfam	PF02362	1.0E-11	11	84	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MFIWLDILQK IPVQFKRRYL PPCDEMIFLV DEEDGEFQMR YNAKGCGLCT GWNSFAIGQK 60 LADGDSLVFQ LVQRTKFKVY IIRASSYYEN EHCRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12054.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175454.1	4e-36	B3 domain-containing protein Os06g0194400-like
Refseq	XP_020175455.1	4e-36	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	1e-29	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	M0ULJ8	3e-59	M0ULJ8_HORVV; Uncharacterized protein
STRING	MLOC_12054.1	6e-60	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-20	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]