PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12058.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 324aa    MW: 34198.9 Da    PI: 9.5485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12058.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12242287655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L++l+P+     +k  s +++L +Ave+I+ Lq
  MLOC_12058.3 242 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIRGLQ 287
                   689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14239295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-12240291No hitNo description
Gene3DG3DSA:4.10.280.104.9E-13241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-13242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRRFLPAGAG EPSSSSSSGP HGKHEGSEAA AAAGGLRYGG GDISLGRGND LLHAQFRGGE  60
GEMKDDGADM LARHSSSPAG FFSNLMVDDG YHGSRGAGVA GGSGEAHRNT SSSTKMKSQL  120
SFTSGGPQTA AHLSRISEGA SLFPGADVVR AAAHSGGEHP VSRSFSASGS SGGFSIVGPW  180
DESREIIGTL DLGGYESQFS GMASSSSLEL AGMDKYMQAQ QQQDQVGFKV RAKRGCATHP  240
RSIAERERRT RISEKLRKLQ DLVPNMDKQT STSDMLDLAV EHIRGLQSQL QVCRRRATSV  300
IRRVNGCGHG MLTRAWSSDR LCRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12058.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499540.0AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165844.11e-155transcription factor bHLH128-like
TrEMBLM0ULL80.0M0ULL8_HORVV; Uncharacterized protein
STRINGMLOC_12058.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-39bHLH family protein