PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12133.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 31765.5 Da    PI: 8.6129
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12133.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-264494151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+ien++ rqvtfskRr g+lKKA+EL +LCda+v vi+fs +gk+yeyss
  MLOC_12133.2 44 KKIENTTSRQVTFSKRRMGLLKKANELAILCDAQVGVIVFSGSGKMYEYSS 94
                  68***********************************************96 PP
2K-box58.23.6e-201201971491
         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                   +++  +e++++k+e + L+  +R+++GedL+sL+l++  +Leqq+e sl k+R +K++ll +q+ e++++   ++e++
  MLOC_12133.2 120 QQKIIHEMTRMKDESNRLKIILRQYMGEDLGSLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMRQRDMHMSEDQ 197
                   577889*****************************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-393695IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.2723696IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-3037116IPR002100Transcription factor, MADS-box
CDDcd002653.67E-3937111No hitNo description
PRINTSPR004047.9E-283858IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003892IPR002100Transcription factor, MADS-box
PfamPF003193.8E-254592IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-285873IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-287394IPR002100Transcription factor, MADS-box
PfamPF014861.0E-16118197IPR002487Transcription factor, K-box
PROSITE profilePS5129712.982120211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFLCPLGSPL HLLTKKQTQP QPQPTGGEEI QWAGAMGRGK VELKKIENTT SRQVTFSKRR  60
MGLLKKANEL AILCDAQVGV IVFSGSGKMY EYSSPPWRIA NIFDRYLKAP STRFDDMDVQ  120
QKIIHEMTRM KDESNRLKII LRQYMGEDLG SLTLQDVSNL EQQIEFSLYK VRLRKQQLLD  180
QQLLEMRQRD MHMSEDQSSS YMFHMNQARD QQGQPADVMN PKLFPLWDVG DQIYGQDAES  240
SMTALKLSPQ LQEYKLQPVQ PNLQEPNLHG YVLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-163695160MEF2 CHIMERA
6byy_B8e-163695160MEF2 CHIMERA
6byy_C8e-163695160MEF2 CHIMERA
6byy_D8e-163695160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12133.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180820.11e-164MADS-box transcription factor 31-like
SwissprotQ84NC29e-91MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLM0ULW40.0M0ULW4_HORVV; Uncharacterized protein
STRINGMLOC_12133.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.33e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]