PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12133.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26445.4 Da    PI: 8.8811
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12133.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.6e-27959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+ien++ rqvtfskRr g+lKKA+EL +LCda+v vi+fs +gk+yeyss
  MLOC_12133.3  9 KKIENTTSRQVTFSKRRMGLLKKANELAILCDAQVGVIVFSGSGKMYEYSS 59
                  68***********************************************96 PP
2K-box58.72.4e-20851621491
         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                   +++  +e++++k+e + L+  +R+++GedL+sL+l++  +Leqq+e sl k+R +K++ll +q+ e++++   ++e++
  MLOC_12133.3  85 QQKIIHEMTRMKDESNRLKIILRQYMGEDLGSLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMRQRDMHMSEDQ 162
                   578889*****************************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.272161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-30281IPR002100Transcription factor, MADS-box
CDDcd002651.70E-38276No hitNo description
PRINTSPR004045.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-1783162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.65685176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKVELKK IENTTSRQVT FSKRRMGLLK KANELAILCD AQVGVIVFSG SGKMYEYSSP  60
PWRIANIFDR YLKAPSTRFD DMDVQQKIIH EMTRMKDESN RLKIILRQYM GEDLGSLTLQ  120
DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MRQRDMHMSE DQSSSYMFHM ARDQQGQPAD  180
VMNPKLFPLW DVGDQIYGQD AESSMTALKL SPQLQEYKLQ PVQPNLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-16160160MEF2 CHIMERA
6byy_B5e-16160160MEF2 CHIMERA
6byy_C5e-16160160MEF2 CHIMERA
6byy_D5e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12133.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180820.11e-155MADS-box transcription factor 31-like
SwissprotQ84NC27e-92MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A287J4A61e-165A0A287J4A6_HORVV; Uncharacterized protein
TrEMBLA0A287J4H21e-166A0A287J4H2_HORVV; Uncharacterized protein
STRINGMLOC_12133.21e-157(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]