PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12183.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 351aa    MW: 38209.1 Da    PI: 8.6136
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12183.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.7e-131135327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C+++++tGtCk+G++CkF+H++
  MLOC_12183.1 11 QPECQYYLKTGTCKFGATCKFHHPK 35
                  799********************96 PP
2zf-CCCH30.75.3e-105881427
                  ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                  ++C +++rtG+Ck+ ++CkF+H++
  MLOC_12183.1 58 KECVYYLRTGQCKFASTCKFHHPQ 81
                  68********************97 PP
3zf-CCCH39.97.1e-13217242227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    +++C+f+++tG Ck+G+ CkF+H++
  MLOC_12183.1 217 EQPECQFYMKTGDCKFGAVCKFNHPK 242
                   5799********************96 PP
4zf-CCCH38.81.5e-12262288127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C f++r+G+Ck+G++CkF H++
  MLOC_12183.1 262 PGEPICTFYSRYGICKFGPNCKFDHPM 288
                   5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.422836IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6835IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-61037IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-101135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-51435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.775482IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-55681IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-65881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892215243IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5215242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5217243IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4221241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178261289IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7261288IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-10263288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4266286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MKGEYPYRVG QPECQYYLKT GTCKFGATCK FHHPKEKAAI AISAQLNVLG YPLRLNEKEC  60
VYYLRTGQCK FASTCKFHHP QPSSTMVAIR SSICSPGQST TSPGRNTYSG AVTNWSLSRS  120
ASFIASPRWP GPSGYEQVIV PQGLVQVPGW NPYAAQMGSS SLDGQQRTPG TAHYYGTHQR  180
ETTGMGEHGM FTSHKAGSAP LGVYAVQGEN TFPERPEQPE CQFYMKTGDC KFGAVCKFNH  240
PKKRMVPAPN CALSPLGLPL RPGEPICTFY SRYGICKFGP NCKFDHPMGT ILYGSPTSPT  300
GDVPPLHYQL APTPGLSERL LDGGSGRSHQ LPQSDSQHIP SGDGSDEREA S
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3551010.0AK355101.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237293.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A287QVR90.0A0A287QVR9_HORVV; Uncharacterized protein
STRINGMLOC_12183.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-116zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]