PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12473.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 36aa    MW: 3990.52 Da    PI: 7.4436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12473.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-071535121
                     TSSS-HHHHHHHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGg 21
                     +g+WT+eEd+ lv+ +++ Gg
     MLOC_12473.1 15 KGPWTEEEDKALVEHIQKRGG 35
                     79***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-9634IPR009057Homeodomain-like
SuperFamilySSF466899.72E-7636IPR009057Homeodomain-like
PROSITE profilePS5129411.841036IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432712e-36AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
GenBankAL6629522e-36AL662952.6 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence.
GenBankAL7315792e-36AL731579.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence.
GenBankAP0149602e-36AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-36CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552352e-36CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169249.12e-19transcription factor MYB39-like
RefseqXP_020198492.12e-19transcription factor MYB39-like
TrEMBLA0A287JBK51e-18A0A287JBK5_HORVV; Uncharacterized protein
STRINGMLOC_12473.15e-19(Hordeum vulgare)
STRINGOPUNC04G21140.12e-18(Oryza punctata)
STRINGTRIUR3_25971-P18e-19(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-12myb domain protein 9