PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12474.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 241aa    MW: 26410.9 Da    PI: 4.8469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12474.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.4e-098312347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+tIa ++  gRt++++k++w+++
     MLOC_12474.1  8 RWATIATHLE-GRTDNEIKNYWNTH 31
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139136IPR017930Myb domain
SuperFamilySSF466899.36E-8739IPR009057Homeodomain-like
PfamPF002492.4E-6831IPR001005SANT/Myb domain
CDDcd001672.43E-6832No hitNo description
Gene3DG3DSA:1.10.10.605.1E-12848IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MIFLVDVRWA TIATHLEGRT DNEIKNYWNT HIRKKLLRMG VDPVTHQQLP PDHHLDGASA  60
SLLPEALLWA AAAARLGGLD TGALRQAQLL QHLLHTIGSN NDATNLIANL AAANSVLNSS  120
SRIVPSHLLQ DQMNMLSGTN YLQPGYLCNT TSNFTEQDVV QQQLIKDMSP GTSTFEAAGP  180
ADQHCNTTAA FAARDVAPAV DMLPVQEFAG LMEPMELQLP NLCSLESDSF WKDLLEDGYR  240
L
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12474.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700904e-51AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds.
GenBankBT0344844e-51BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169249.11e-121transcription factor MYB39-like
RefseqXP_020198492.11e-121transcription factor MYB39-like
TrEMBLM0UN641e-178M0UN64_HORVV; Uncharacterized protein
STRINGMLOC_12474.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54230.12e-18myb domain protein 49