PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12609.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 204aa MW: 23771.6 Da PI: 8.2125

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12609.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.6	7.6e-26	95	142	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF +pik AA eL+v+lT+LK++CR+ GI+RWPhRk+ksl MLOC_12609.1 95 LTFELVSQYFCMPIKRAAEELNVGLTILKKRCREIGIPRWPHRKVKSL 142 799*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.144	78	163	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	95	142	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MYLLQQWSFE YLLEDALFYP TQHLCGTSTT TATTQSCLLQ DEHELGDARL EVYIRSFLAA 60 LERNYHGGEK ELKGELGRDA GEKKHNRSEE KPFVLTFELV SQYFCMPIKR AAEELNVGLT 120 ILKKRCREIG IPRWPHRKVK SLETLIKNAQ ELGKPMIEVE MLQRKKKLIE ESPGHIELDE 180 ATMVLRQACF KEKFKRRRLM AIEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	198	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12609.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756209.2	4e-59	protein RKD1
Swissprot	Q9FGD1	9e-32	RKD3_ARATH; Protein RKD3
TrEMBL	M0UNP6	1e-148	M0UNP6_HORVV; Uncharacterized protein
STRING	MLOC_12609.1	1e-149	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	8e-34	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]