PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12832.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 239aa    MW: 25523.5 Da    PI: 5.235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12832.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-131663354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r+h+e+ErrRR+riN  +++Lr+llP+      k  +Ka+ L ++ e++k+L
  MLOC_12832.3 16 RSHSEAERRRRQRINGHLARLRSLLPNT----TKQTDKASLLAEVLEHVKEL 63
                  78*************************8....355***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8971363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-111666No hitNo description
Gene3DG3DSA:4.10.280.101.7E-141672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-141672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-111663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-121969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.39E-5116163No hitNo description
Gene3DG3DSA:3.30.70.2602.0E-6116166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNAGEIMDAK ALAASRSHSE AERRRRQRIN GHLARLRSLL PNTTKQTDKA SLLAEVLEHV  60
KELKRQTSAM TMMAAAAVGG DEDDDGGPVQ MLPTEADELG VDAAEDGDGR LVVRASLCCE  120
DRPDLIPDII RALAALRLRA HRAEITTLGG RVRSVLLITA EEGEEADDEG GRVSGDGIDE  180
ECAASHRRHE CIASVQEALR GVMDRRAACS NDTSSSGGGG GGSIKRQRMN YGAHEQCSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12832.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680220.0AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188174.11e-120transcription factor bHLH30-like
SwissprotQ9S7Y14e-59BH030_ARATH; Transcription factor bHLH30
TrEMBLM0UPG01e-134M0UPG0_HORVV; Uncharacterized protein
STRINGMLOC_12832.31e-169(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]