PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13019.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 226aa    MW: 23210.4 Da    PI: 4.4198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13019.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-105292348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Iar+++ gRt++++k++w++yl
     MLOC_13019.1  5 RWSRIARHLP-GRTDNEVKNYWNSYL 29
                     6*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.899133IPR017930Myb domain
CDDcd001672.11E-8429No hitNo description
SuperFamilySSF466896.32E-9434IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-13430IPR009057Homeodomain-like
PfamPF002493.9E-8529IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
LYYRRWSRIA RHLPGRTDNE VKNYWNSYLK KRVEGGKGAP NSPTPAAASS AADSDGSQSP  60
SPGEVISTVQ ERASRPSNSA GSSEPPHESS SADSSCLTVT EPPACRAYAP VAPKVMFADW  120
LNMDYIGGQM GAAAAAAPGP EAAGVVGAGA GVGAGGGGDH CQVMSQGSSA QVDGPPGVED  180
SLHGGFGDNG TCWEFLEQFD SMDQMQVGGG GGFCDLLSMT EFFALN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168350.14e-95transcription factor LAF1-like
TrEMBLA0A287UCN71e-109A0A287UCN7_HORVV; Uncharacterized protein
STRINGMLOC_13019.21e-160(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-11myb domain protein 19