PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13019.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 257aa    MW: 26988.1 Da    PI: 8.2831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13019.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl
     MLOC_13019.3 15 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding543.7e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
     MLOC_13019.3  69 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      569******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8191062IPR017930Myb domain
SuperFamilySSF466896.97E-2912109IPR009057Homeodomain-like
SMARTSM007175.3E-111464IPR001005SANT/Myb domain
PfamPF002498.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-221668IPR009057Homeodomain-like
CDDcd001673.23E-101862No hitNo description
PROSITE profilePS5129425.12363117IPR017930Myb domain
SMARTSM007176.3E-1467115IPR001005SANT/Myb domain
PfamPF002491.4E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2569116IPR009057Homeodomain-like
CDDcd001679.19E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGCKACEKPR PSYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGG  120
KGAPNSPTPA AASSAADSDG SQSPSPGEVI STVQERASRP SNSAGSSEPP HESSSADSSC  180
LTVTEPPACR AYAPVAPKVM FADWLNMDYI GGQMGAAAAA APGPEAAGVV GAGAGVGAGG  240
GGDHCQVMSQ GSSAQVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26111183109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13019.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387441e-151BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds.
GenBankHQ8587141e-151HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168350.11e-129transcription factor LAF1-like
TrEMBLA0A287UCU31e-152A0A287UCU3_HORVV; Uncharacterized protein
TrEMBLA0A287UD961e-152A0A287UD96_HORVV; Uncharacterized protein
STRINGMLOC_13019.21e-151(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-58myb domain protein 19