PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13062.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 278aa    MW: 29973.4 Da    PI: 10.1052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13062.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-172368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
     MLOC_13062.1 23 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 68
                     899*****************************.***********996 PP
2Myb_DNA-binding61.61.6e-1976119247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
     MLOC_13062.1  76 RPFTEEEEERLLAAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 119
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7411869IPR017930Myb domain
SuperFamilySSF466894.12E-3022116IPR009057Homeodomain-like
SMARTSM007172.1E-142271IPR001005SANT/Myb domain
PfamPF002498.6E-172368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-272476IPR009057Homeodomain-like
CDDcd001671.76E-142667No hitNo description
PROSITE profilePS5129428.45670124IPR017930Myb domain
SMARTSM007171.9E-1674122IPR001005SANT/Myb domain
PfamPF002492.2E-1675118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2277119IPR009057Homeodomain-like
CDDcd001671.14E-886117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAASSSTTNT SEGGAKPSSL CPRGHWRPGE DEKLRQLVEK YGPQNWNSIA EKLEGRSGKS  60
CRLRWFNQLD PRINKRPFTE EEEERLLAAH RVHGNKWALI ARHFPGRTDN AVKNHWHVVR  120
ARRSRERCRL LAKAASSTFP SYSYSGGAQL DFTGASAGSF CFGFSKPGGG GFFGSPPAAA  180
AAPSSTPVLF NGYGVGASGS KSLLSRYSSY VDGGKQPAAP SSLSIAFSSP PSIEALALDG  240
RGGHDHHRRK DYHVDGDEPL KTKDAPPFID FLGVGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31231237107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519100.0JF951910.1 Triticum aestivum clone TaMYB27 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156227.11e-168transcription factor RAX1-like
TrEMBLM0UQA30.0M0UQA3_HORVV; Uncharacterized protein
STRINGMLOC_13062.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-57myb domain protein 52