PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13159.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 246aa    MW: 26954 Da    PI: 9.1388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13159.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-1460106455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN++f eL  ++P +     kK++K +iL  A+ Y+k+Lq
  MLOC_13159.1  60 DHIMAERKRREKINQRFIELSAVIPGL-----KKMDKGTILADATTYVKELQ 106
                   699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.06656105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1760115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1160106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1860114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-1561110No hitNo description
SMARTSM003531.7E-1362111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSTGTSNTL SMSWNFGAVL PPQPVSSSGG GMIAARAPLG SAVSQPTRRT SKKSTPYAQD  60
HIMAERKRRE KINQRFIELS AVIPGLKKMD KGTILADATT YVKELQERVK YLEAAGGNHR  120
SVETVVLVTK PQCLVAPDNE ACPGSFLAAG TPARRELLPE IEAKFSEDNM MVRIHCEMNG  180
KGLVARVLAE VEELHLRIVH NDVMPFTAST VIITTMAKVE EGFTVKREEI VGRLNSVLYQ  240
HSSNNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753RRTSKKS
26469ERKRRE
36570RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659951e-44AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181335.11e-146transcription factor NAI1-like
TrEMBLA0A287PSI80.0A0A287PSI8_HORVV; Uncharacterized protein
STRINGMLOC_13159.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-44bHLH family protein