PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_13459.1

Common Name

BBR

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

BBR-BPC

Protein Properties

Length: 268aa MW: 29832.7 Da PI: 9.546

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_13459.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	120.3	4.9e-37	1	266	1	217
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maflqrdkalae 69 mdddgs + rn+g+ye k nlglqlm s++ rd+k+ ++++ +++ +++++rd m+f++++++++ MLOC_13459.1 1 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVTggHRDTKPllpngtfLQHHTPPHHPPHSHHPRDygngepsggmpaeppaihMDFVRNEAWMHP 94 9************965...********9999*999999966777789999999****************************98 PP GAGA_bind 70 .....rnkalverdnkllalllvensla................................salpvgvqvlsgtksidslqqlsepqledsavelree 129 ++++ ++++++ + l + +++p+g +++++++ +++lq+ ++++ ++++e MLOC_13459.1 95 sqhqhQHQHQHQHQHQHQHQL------QhqhqhqhsrelkvlnavpvgpaphighpghavHHHPTGFGMMPDARGAHTLQM-----MQPQEPPVPDE 180 433221111122222222222......222334467789999999999999999999999999999999999999999999.....66667777788 PP GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtG 217 ek++ + +e+ ++++ k+ +kkrq++++pk++k kk+kk +++ ++ +++ +rs+ + k +++v+ng+++D+s++P+PvCsC G MLOC_13459.1 181 EKITPPLVED-HSVVGSKPPVKKRQQGRQPKVPKPKKPKK-DATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCMG 266 8777666655.667777778888*************.556667777777779****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.9E-48	1	266	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.5E-44	1	268	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDDDGSLSIR NWGFYETMKG NLGLQLMPSV TGGHRDTKPL LPNGTFLQHH TPPHHPPHSH 60 HPRDYGNGEP SGGMPAEPPA IHMDFVRNEA WMHPSQHQHQ HQHQHQHQHQ HQHQLQHQHQ 120 HQHSRELKVL NAVPVGPAPH IGHPGHAVHH HPTGFGMMPD ARGAHTLQMM QPQEPPVPDE 180 EKITPPLVED HSVVGSKPPV KKRQQGRQPK VPKPKKPKKD ATPGEDGAPK ARAPRSRGPL 240 KPVEMVINGI DFDISRIPTP VCSCMGGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269\|PubMed:12795701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_13459.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ507214	0.0	AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant.
GenBank	AK372672	0.0	AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24.
GenBank	AK376389	0.0	AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165863.1	1e-124	protein Barley B recombinant
Swissprot	Q8GUC3	0.0	BBR_HORVU; Protein Barley B recombinant
TrEMBL	F2E947	0.0	F2E947_HORVV; Predicted protein
STRING	MLOC_13459.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-08	basic pentacysteine 2

Publications ? help Back to Top
Santi L, et al. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J., 2003. 34(6): p. 813-26 [PMID:12795701]