PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_13636.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 152aa MW: 17030.6 Da PI: 11.2661

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_13636.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.2	5.9e-26	23	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekA..tPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt eL + Fv+av++LG + A tPk+ilelm+v+gLt++hvkSHLQ+YR MLOC_13636.2 23 PRMRWTAELESGFVRAVDRLGSRDSAkvTPKRILELMDVQGLTISHVKSHLQMYRC 78 8*****************99876555*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-25	19	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-13	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-21	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-9	24	77	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAKKQEAWRR GGFVRRYTRS SVPRMRWTAE LESGFVRAVD RLGSRDSAKV TPKRILELMD 60 VQGLTISHVK SHLQMYRCTP HGNKGKQGGG GAKNPCAFLP AEMQPQLGLK NHPFATDERG 120 SEGLTFPPMK RGGQVQGRGR DCSLMQEHAR KQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-15	24	78	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-15	24	78	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-15	24	78	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-15	24	78	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-15	24	78	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_13636.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756067.1	2e-43	myb-related protein 2
TrEMBL	A0A287UG85	1e-92	A0A287UG85_HORVV; Uncharacterized protein
STRING	MLOC_13636.1	7e-79	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-23	G2-like family protein