PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13653.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 183aa    MW: 19871.2 Da    PI: 4.8933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13653.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1163109455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++ ++ErrRR+ +N+++  +r+++P+      +K++Ka+i + A+ YI +Lq
  MLOC_13653.1  63 KNIINERRRRRTLNEKLYAIRRVVPNI-----TKMDKASIIQDAIAYIEELQ 109
                   56799*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.98959108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1562117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-963109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1365114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-875113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEPDMDVSFD FSWEALVLEL GDANNMYLPA EDSLSGLYDD STSSPDGATS RPTTKATTSL  60
ERKNIINERR RRRTLNEKLY AIRRVVPNIT KMDKASIIQD AIAYIEELQE QERQILAALR  120
TDGSTAVVKA EDAASTGSNG VDHGAGSSPG KKMRRTTSAS SINGALCSGA TQPVQILEVI  180
IHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651950.0AK365195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177098.11e-103transcription factor bHLH35-like isoform X2
RefseqXP_020177099.11e-103transcription factor bHLH35-like isoform X3
TrEMBLA0A287Q0R01e-128A0A287Q0R0_HORVV; Uncharacterized protein
STRINGMLOC_13653.11e-132(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-13bHLH family protein