PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_14005.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 144aa MW: 16145 Da PI: 4.7866

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_14005.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.9	1.5e-17	1	86	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++s+v++ +l lp +f+++h ++ ++ +++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l + ++f ++ +f+ MLOC_14005.1 1 MVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPDRF--KIYIFK 86 57899************9994.44.4459***********..555444..*********************9876777..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.421	1	88	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.02E-20	1	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.9E-16	1	86	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.9E-17	1	87	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.4E-17	1	88	IPR003340	B3 DNA binding domain
CDD	cd10017	4.18E-24	1	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVRSHVSSCF WLGLPSSFCK DHLPPREHKM VLEDEEGVEF DAVYIGNRTG LSGGWRGFSM 60 HHDLEDGDSL VFELAEPDRF KIYIFKAIED AKEAEPNGKN ADMDTADTNS AEEVLDQMDS 120 PVSEPPSSPE PLKGAKKRKL HGRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_14005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371930	0.0	AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158104.1	2e-80	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	5e-67	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A287G3K5	1e-103	A0A287G3K5_HORVV; Uncharacterized protein
TrEMBL	A0A287G3L2	1e-103	A0A287G3L2_HORVV; Uncharacterized protein
TrEMBL	F2E706	1e-103	F2E706_HORVV; Predicted protein (Fragment)
STRING	MLOC_14005.1	1e-103	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-34	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]