PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14584.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 1080aa    MW: 119950 Da    PI: 6.4273
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14584.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-20127228199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++i+r++++r++lt+GW+ F + ++L +gD+v+F   ++ +++
  MLOC_14584.2 127 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLIAGDSVLFI--RDAKQQ 220
                   99*****************************9777665.49************************************************..456777 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  MLOC_14584.2 221 LLLGIRRA 228
                   89999997 PP
2Auxin_resp118.46e-39253336183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  MLOC_14584.2 253 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 336
                   79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-41116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-38119242IPR015300DNA-binding pseudobarrel domain
CDDcd100174.52E-17126216No hitNo description
SMARTSM010196.8E-19127229IPR003340B3 DNA binding domain
PfamPF023622.2E-18127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166127229IPR003340B3 DNA binding domain
PfamPF065071.4E-33253336IPR010525Auxin response factor
PfamPF023093.4E-99591052IPR033389AUX/IAA domain
PROSITE profilePS5174526.7659671051IPR000270PB1 domain
SuperFamilySSF542772.26E-79711046No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MAAPEGSGAG GGEGPRGSRV NQELWYACAG PLVALPPPGS LVVYFPQGHS EQVAASMRKD  60
ADAQIPSYPN LPSKLICILH SVTMQSDPET DEVYARMTLQ PVSNCDKEIL LASELALKQN  120
KPQTEFFCKT LTASDTSTHG GFSVPRRAAE RIFPRLDFSL QPPAQELQAR DLHDTIWTFR  180
HIFRGQPKRH LLTTGWSLFI SGKRLIAGDS VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL  240
SSDSMHIGVL AAAAHAAANN SQFTIFYNPR ASPSEFVIPF AKYQKAVYGN QLSLGMRFRM  300
MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNIQVAWD EAAPSERRTR VSLWDIEPVI  360
APFFIYPTPL FTAKRARQPG MIDDDTSGMD NLFKRTMPWL GEEICKKDMN TQNSIVPGLN  420
LAQSVQWMNM QQNLSLAGTV MQPELLNSLA GKHVQNLSAA DISRQISFQP QFLQQNNIQF  480
DTSLLPQQNQ QAEQLAKAIA TPNQLENIMA PQKVDQDCYS DQKQRAVTQT VQGSQANLNI  540
TQPEHVVQAQ FEQPQVILQA QLQQQQPLVQ SHTIFQGGLQ EIQVLQQQQQ PQHHQQVQHS  600
VQEQQQMKIR PVHVPSDANM NTQLSSDHQM KLQLLKALHS QQHLTMEQQK MLFDLQQQVI  660
NSQSNPQQRV QGATQTVGFH NSNTIQYATQ QKAQSHQPIE GSPGGTIPVA KSDTITSIGA  720
SSLNVTSRMQ LVRTDNVPSS STSPSTTTNP VLLHSIPSSS KNQSLPTAAK TSQSSVGLGS  780
TIEQEMKHYQ SVKPTIMIPK MIEQGPATER DYINNPHMDY LDTSSSATSV CLSQADGSLQ  840
QNFPSSSFDQ HQLLRDTAPD SEFEISDPTN NLLFGVNIDG QLGLPLNADA LLANSIENDK  900
FMDEMAGNGI SNYISSKDSQ QELSSSMISH SLGVADMGFN SIDSATNDPP FLNRNSRAPA  960
PAHQRMRTYT KVHKRGAVGR SIDMNRYSGY DELKHDIARM FGIEGQLGDQ SRVGWKLVYE  1020
DHEKDVLLVG DDPWEDFLNC VRCIRILSPQ EEMQMRLVGD FGDGFLPNQA CSSSDGGQPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641435745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14584.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151212.10.0auxin response factor 21-like
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A287WHI70.0A0A287WHI7_HORVV; Auxin response factor
STRINGMLOC_14584.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]