PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_14639.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SRS

Protein Properties

Length: 247aa MW: 25035 Da PI: 8.2211

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_14639.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	231	2e-71	11	172	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a s+ a+++++a sk++r l+s++q+++s+t++s+a++++ MLOC_14639.1 11 GSGTTTCQDCGNQAKKDCTHSRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLGGSA-SSPANASTAAGSKKPRLLSSQQQATTSHTSTSNATTPR 106 57999*******************************************97766665.66667789999*********************** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +t+s lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ MLOC_14639.1 107 SYDTTSshqdasfrgnLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 172 999999*******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-63	14	171	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-29	123	170	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLDGGGDGSS GSGTTTCQDC GNQAKKDCTH SRCRTCCKSR GFDCSTHVKS TWVPAARRRE 60 RQHLGGSASS PANASTAAGS KKPRLLSSQQ QATTSHTSTS NATTPRSYDT TSSHQDASFR 120 GNLPRQVRAP AVFRCVRVTS IDDGEDEYAY QATVTINGHV FKGFLYDQGV DDGRASNDID 180 PSTGGAVPNM SELHLGGGGG NAARGGGGSS SMAPSDMYGG GGAGGAGGGG GGQHILGGGS 240 SYGNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_14639.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355643	0.0	AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22.
GenBank	AK363554	0.0	AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182901.1	1e-132	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-65	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A287MMI0	1e-177	A0A287MMI0_HORVV; Uncharacterized protein
TrEMBL	A0A287MMI4	1e-177	A0A287MMI4_HORVV; Uncharacterized protein
STRING	MLOC_14639.1	1e-179	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-51	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]