PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14844.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 223aa    MW: 24571.6 Da    PI: 7.214
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14844.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.71.5e-091203655
       G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                  m++kgLtl+h+kSHLQkYR+
  MLOC_14844.2  1 MGMKGLTLYHLKSHLQKYRM 20
                  899****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-8121IPR009057Homeodomain-like
PfamPF143796.2E-2565109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGMKGLTLYH LKSHLQKYRM GKQSKKDTGF ETNRGAFAAQ GISFSSAVPP NAPSAGNSNM  60
GETPLADALR YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QTILEKAQKN LSYEAGGDAN  120
LETTRSQLTD FNLALSGFMD DATQACQQND GELAKALSED SLRAGNLGFQ LYHGVQDGED  180
VKCATDEDLL LLDLNIKGGY DHRLSSHGMR RGAVDLAVGQ HRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14844.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569260.0AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14.
GenBankAK3660410.0AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170372.11e-146myb family transcription factor PHL11-like
TrEMBLF2CZ701e-162F2CZ70_HORVV; Predicted protein
STRINGMLOC_14844.31e-163(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-38G2-like family protein