PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14920.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 137aa    MW: 14958 Da    PI: 10.5485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14920.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124466123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cg+sFs+   L  H  +H
  MLOC_14920.1 44 FVCKTCGRSFSSFQALGGHRTSH 66
                  89**********99998888777 PP
2zf-C2H213.10.0002895117123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg  F     L  H+r+H
  MLOC_14920.1  95 HRCHVCGLEFEMGQALGGHMRRH 117
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-114468IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8244471IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-744117No hitNo description
SMARTSM003550.14466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139121.3E-1194120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6695122IPR007087Zinc finger, C2H2
SMARTSM003550.2895117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVSSMKQYRD DADAPSSVSL SLSLGAVADR ISKKMRRGGA DGEFVCKTCG RSFSSFQALG  60
GHRTSHLRGR HGLALGLAAG SEQVSRKSRD QKQVHRCHVC GLEFEMGQAL GGHMRRHREQ  120
EATTTAQAQP VLLQLFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198416.11e-67zinc finger protein ZAT8-like
SwissprotQ9LX859e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM0UW604e-94M0UW60_HORVV; Uncharacterized protein
STRINGMLOC_14920.17e-95(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-20C2H2 family protein