PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15000.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 244aa    MW: 26383.7 Da    PI: 8.4779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15000.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-1067115355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MLOC_15000.1  67 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 115
                   58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1762132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-1162119No hitNo description
PROSITE profilePS5088815.6564114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1765131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-767115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1170120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGDQVQSSN VAADSANESV QSKDKGEESS PATGTTTGGR SKGKGAKEGS EKEDYIHVRA  60
RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  120
LSMKLATVNP RLDLNIEGLL SKDLLRFPGV SSSSMGFSPE MMHPQLQLSQ PGLMQGGAAA  180
MANSDVFRRI MQAQLGAKDG SHSQMAHALN GPFSEHVAQM AYPSMGSSHS QDLSMRPSQD  240
AYQM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627780.0AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150009.11e-155transcription factor bHLH49-like
SwissprotQ9CAA97e-57BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A287RPQ71e-178A0A287RPQ7_HORVV; Uncharacterized protein
TrEMBLM0UWF11e-179M0UWF1_HORVV; Uncharacterized protein
STRINGMLOC_15000.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.28e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]