PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15569.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 102aa    MW: 10736.8 Da    PI: 4.6344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15569.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000261840123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C  Cg  Fs    L  H+r+H
  MLOC_15569.1 18 HECAVCGLEFSMGQALGGHMRRH 40
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-61644No hitNo description
Gene3DG3DSA:3.30.160.601.6E-41643IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.3E-121742IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0111845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MLLHDAADAA ERDRARVHEC AVCGLEFSMG QALGGHMRRH RGEAAPSTTS SAAVHGEASS  60
GATQQQELMP DLNYPPMDDC GGDGQGTSAD RSSERQLLDL LG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720661e-172AK372066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174851.16e-54zinc finger protein ZAT11-like
TrEMBLF2E7E21e-67F2E7E2_HORVV; Predicted protein
STRINGMLOC_15569.18e-68(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-14C2H2 family protein