PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16429.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 238aa    MW: 25459.8 Da    PI: 6.4171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16429.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08164204954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  MLOC_16429.1 164 ARLRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 204
                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-13154213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5165204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-6177209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDFDLLMSSS PEAQLALMNT MLQLEQALND QSLMMAEASP PISPAQTPSH SLSPPPHVST  60
ACAPTDAGYF YHQDMHAQAA AAGYADAGTG GVHQEYVVSP GAVVFDGPTG APQGYSSSPS  120
SSDAMREMIF HIAALQPVDI DPEAVRPPKR RNVRTSKDPQ SVAARLRRER ISERIRVLQR  180
LVPGGTKMDT ASMLDEAIHY VKFLKSQVQS LELAAAATGA AAHRAAAFAY PALQHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RPPKRR
2164169RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699600.0AK369960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2102B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177668.11e-132transcription factor HEC1-like
TrEMBLF2E1D91e-172F2E1D9_HORVV; Predicted protein
STRINGMLOC_16429.11e-173(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-41bHLH family protein