PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_16480.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 97aa MW: 10837.7 Da PI: 10.0867

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_16480.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46	9.4e-15	13	92	20	99
HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 20 kkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 f++e+ +++ + + +++ ++W +l r k+++ ++ +GW++F+++n+Lk gD+++Fk ++ s+ ++v+++rk MLOC_16480.6 13 LGFCNEYasT--LPSGDQTLMLQLEDKEWPTTL--RVKGSKKIICRGWSKFASDNNLKLGDICLFKIAeRStSSLAMRVHFIRK 92 5688888542..33444455677899*****..77777778999******************763556788888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.4E-4	1	93	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.29E-14	1	93	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.35E-12	1	91	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.0E-15	2	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.3E-12	12	92	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	29	93	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MTKSCVGGKL FSLGFCNEYA STLPSGDQTL MLQLEDKEWP TTLRVKGSKK IICRGWSKFA 60 SDNNLKLGDI CLFKIAERST SSLAMRVHFI RKSGVFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_16480.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3B6HVR8	1e-45	A0A3B6HVR8_WHEAT; Uncharacterized protein
TrEMBL	A0A446R6I0	1e-45	A0A446R6I0_TRITD; Uncharacterized protein
TrEMBL	A0A446R6I2	1e-45	A0A446R6I2_TRITD; Uncharacterized protein
STRING	Traes_4AL_538993FFD.1	2e-46	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	4e-10	B3 family protein