PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_16487.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

LSD

Protein Properties

Length: 93aa MW: 10152.7 Da PI: 6.8808

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_16487.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.7	2.5e-15	40	64	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V MLOC_16487.1 40 CGQCETLLMYPFGAPAVKCSLCLFV 64 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.9E-10	38	65	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-12	40	64	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
FYPCAFLPSH GCSNITPSYA SKGILPYICV AAHEVGNVHC GQCETLLMYP FGAPAVKCSL 60 CLFVTEIGER NVRPRISVEQ VTPTHQQELA NQV

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in plant growth and disease resistance. {ECO:0000269\|PubMed:17404758}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_16487.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353750	1e-101	AK353750.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157530.1	2e-33	fibrous sheath CABYR-binding protein-like
Swissprot	Q704V3	1e-26	LOL5_ORYSJ; Protein LOL5
TrEMBL	A0A453F1D8	5e-32	A0A453F1D8_AEGTS; Uncharacterized protein
TrEMBL	A0A453F1N3	1e-33	A0A453F1N3_AEGTS; Uncharacterized protein
STRING	MLOC_16487.1	6e-63	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-15	lsd one like 2