PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16609.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 220aa    MW: 24474.7 Da    PI: 7.1456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16609.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-10115162455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+  Er RR+ri +++  L++l+P +    +k   Ka iL + ++Y++sLq
  MLOC_16609.1 115 SHSLSERVRRERISERMRMLQSLVPGC----DKVTGKALILDEIINYVQSLQ 162
                   799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.10E-11109166No hitNo description
SuperFamilySSF474598.77E-18109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17111176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-7115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP  60
KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK GYIHVRARRG QATDSHSLSE  120
RVRRERISER MRMLQSLVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM RIASLSPVVY  180
GFGMESEAAF SDQSHVWANQ YAQIVYITIV MAIYFSLPFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.11e-123transcription factor bHLH137-like
SwissprotQ93W882e-50BH137_ARATH; Transcription factor bHLH137
TrEMBLM0V0Z61e-163M0V0Z6_HORVV; Uncharacterized protein
STRINGMLOC_16609.31e-142(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]