PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16609.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 146aa    MW: 16111.1 Da    PI: 9.2089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16609.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-06115141430
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                   +h+  Er RR+ri +++  L++l+P +
  MLOC_16609.5 115 SHSLSERVRRERISERMRMLQSLVPGC 141
                   799**********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-4109143No hitNo description
SuperFamilySSF474594.71E-8109143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.344111146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7114141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP  60
KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK GYIHVRARRG QATDSHSLSE  120
RVRRERISER MRMLQSLVPG CDKVIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16609.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.16e-85transcription factor bHLH137-like
SwissprotQ93W886e-25BH137_ARATH; Transcription factor bHLH137
TrEMBLM0V1001e-103M0V100_HORVV; Uncharacterized protein
STRINGMLOC_16609.31e-101(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-13bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]