PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16989.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 323aa    MW: 35755.8 Da    PI: 5.2568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16989.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.42e-951832371374
          GRAS  71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetger 164
                   +  s+e++  +k++++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i +G+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  r
  MLOC_16989.1  18 RLASDEVTLCYKTLNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVHGIQWAALLQALATRPEGKPsRIRISGVPSPYLGpqPAASLAATSAR 114
                   2338899999********************************************************887769********998898999******** PP

          GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                   L++fA+ lgv+fef + + + +++l+l++++v+p+E++aVn++lql++ll   ++++++ ++vL+l ksl P vv++ e e+++n++ F++rf++al
  MLOC_16989.1 115 LRDFAQLLGVDFEFVP-LLRPVHELDLSDFSVEPDEVVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLGPAVVTLGEYEVSLNRAGFVDRFASAL 207
                   ****************.599******************************...66666777************************************ PP

          GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                   +yy  +f+sl++ ++r+se+r ++Er ++g++i+ +v   ega+r+ r+   ++W++ +e +GF+pv+ls++a++qa+lll  ++ +  y++ e   
  MLOC_16989.1 208 SYYRCVFESLDVAMARDSEDRLTLERCMFGERIRRAVGpPEGADRKDRMAGSGEWQALMEWCGFEPVRLSNYAESQAELLLWDYDsKYKYSLVELPP 304
                   *************************************83699*******************************************777899999999 PP

          GRAS 357 slv.lgWkdrpLvsvSaWr 374
                   +++ l W +rpL++vSaWr
  MLOC_16989.1 305 AFLsLAWDKRPLLTVSAWR 323
                   9988**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.6521301IPR005202Transcription factor GRAS
PfamPF035146.9E-9318323IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
ACRGAARAPL DTASSDARLA SDEVTLCYKT LNDACPYSKF AHLTANQAIL EATGAATKIH  60
IVDFGIVHGI QWAALLQALA TRPEGKPSRI RISGVPSPYL GPQPAASLAA TSARLRDFAQ  120
LLGVDFEFVP LLRPVHELDL SDFSVEPDEV VAVNFMLQLY HLLGDSDEPV RRVLRLAKSL  180
GPAVVTLGEY EVSLNRAGFV DRFASALSYY RCVFESLDVA MARDSEDRLT LERCMFGERI  240
RRAVGPPEGA DRKDRMAGSG EWQALMEWCG FEPVRLSNYA ESQAELLLWD YDSKYKYSLV  300
ELPPAFLSLA WDKRPLLTVS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01232364375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536540.0AK353654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150204.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLF2CPV20.0F2CPV2_HORVV; Predicted protein
STRINGMLOC_16989.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-123GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]