PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17203.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 249aa    MW: 26173.4 Da    PI: 4.7438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17203.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174791351
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa+ 
  MLOC_17203.1 47 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAAI 91
                  9****998.**********843...6*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-124591IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3146104IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2146104IPR016177DNA-binding domain
PROSITE profilePS5103222.85346103IPR001471AP2/ERF domain
SMARTSM003806.1E-3646109IPR001471AP2/ERF domain
CDDcd000181.85E-1947105No hitNo description
PRINTSPR003673.4E-104758IPR001471AP2/ERF domain
PRINTSPR003673.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPDSELNSPA SSSASPPPSP TTARRGVLEK RGRDAGGNGA GGRHPAYRGV RMRAWGKWVS  60
EIREPRKKSR IWLGTFPTPE MAARAHDAAA IVVKGPAAVL NFPELASSLP RPASAAPHDV  120
QAAAARAAAM DPAPVREGMS AEPMPAAATS PLWCRGQMLS QVDDELEEII ELPSIDEDIA  180
AAVEVAFGGT FCQDPVAEPW YEAAWLGEHA GIGSHDELAV SALGLEPSQF WGQPDGIAAS  240
GFGALLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2134103272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036821e-78AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-78AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.11e-143ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-48DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0V2D21e-176M0V2D2_HORVV; Uncharacterized protein
STRINGMLOC_17203.11e-177(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]