PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_17213.7

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 173aa MW: 19168.8 Da PI: 9.8366

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_17213.7	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl MLOC_17213.7 45 KQRLRWTSDLHSRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.171	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-25	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.1E-23	132	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MMYHAKNFSV PFAPQRAQNS EHVSNIGAFG GSNISNPANP VGSGKQRLRW TSDLHSRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKEEKKDSSD 120 SLSNTDSAPG SQINEALKMQ MEVQKRLHEQ LEVQKQLQLR IEAQGKYLQM IIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_17213.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355177	0.0	AK355177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198212.1	1e-122	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	3e-68	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	F2CU75	1e-123	F2CU75_HORVV; Predicted protein
STRING	MLOC_17213.3	1e-124	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-66	G2-like family protein