PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17446.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 145aa    MW: 16429.4 Da    PI: 8.0364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17446.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11107132227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C f++rt tCky ++CkF H++
  MLOC_17446.1 107 GEKECAFYMRTRTCKYEETCKFDHPQ 132
                   7899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.127105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9107132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4111131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP YPYPYPSASG EFDTHVGARR  60
PADVLYHRPI MGSHSTIGQS DDFYSPNTMA KRPRLESSLP IYPQRPGEKE CAFYMRTRTC  120
KYEETCKFDH PQWVPKGGIP KWKEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516310.0AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200958.17e-88zinc finger CCCH domain-containing protein 8 isoform X1
RefseqXP_020200959.12e-88zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ64e-52C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A287L3F11e-100A0A287L3F1_HORVV; Uncharacterized protein
TrEMBLA0A287L3F22e-99A0A287L3F2_HORVV; Uncharacterized protein
TrEMBLA0A287L3F31e-101A0A287L3F3_HORVV; Uncharacterized protein
TrEMBLA0A287L3F61e-99A0A287L3F6_HORVV; Uncharacterized protein
TrEMBLA0A287L3F71e-100A0A287L3F7_HORVV; Uncharacterized protein
STRINGMLOC_17446.11e-103(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-33floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]