PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18038.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 194aa    MW: 21192.8 Da    PI: 7.534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18038.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17371151498
                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++p +fa++++g    s  + l+ + g+sW++k+   +   + vl++GWkeF +a+g++egD ++Fk++g s+f   v +f+
  MLOC_18038.1  37 ETMSVPGRFAKKFDGH--ISEAINLKPPGGKSWSIKV--AGDTAGLVLRSGWKEFLDAHGIEEGDGLLFKYSGASSF--DVLMFD 115
                   4599*********777..6678***************..999999***************************99999..676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2221119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2223123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31124117IPR003340B3 DNA binding domain
CDDcd100171.04E-1725115No hitNo description
SMARTSM010194.4E-627117IPR003340B3 DNA binding domain
PfamPF023624.4E-1538111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGKNCERCTK WQEHCYWSHM ADEKKHLFKL MVGDFAETMS VPGRFAKKFD GHISEAINLK  60
PPGGKSWSIK VAGDTAGLVL RSGWKEFLDA HGIEEGDGLL FKYSGASSFD VLMFDPTGCQ  120
KPPSPRPVKR RGCDDDTEEN SAGAKDRRCG YHASNKDEER APHPPPAANG DGAGLELTLY  180
RGAGKSIALA GKHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RPVKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189910.11e-107B3 domain-containing protein Os03g0622200-like
RefseqXP_020199404.11e-109B3 domain-containing protein Os03g0622200-like, partial
SwissprotQ10GM34e-60Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A287N8R91e-138A0A287N8R9_HORVV; Uncharacterized protein
STRINGMLOC_18038.21e-138(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-25B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]