PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18164.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 156aa    MW: 16708.3 Da    PI: 5.1113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18164.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95e-081243255
           AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                  +lg+f+tae+Aa a+++a+ +l+g
  MLOC_18164.1  1 WLGTFDTAEDAALAYDKAAFRLRG 24
                  9*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.1E-5138IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-10133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-15133IPR001471AP2/ERF domain
PROSITE profilePS5103213.195132IPR001471AP2/ERF domain
CDDcd000184.84E-15134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
WLGTFDTAED AALAYDKAAF RLRGDAARLN FPNLRRGGAH LAGPLHASVN AKLDSICQNI  60
ATAPSSKSAP PDSPKASTST TSTEGDYGSV LSAGSTPLPP PPQSSQHQHQ QPAAPLHEMA  120
NLDFSEAPWD ESDAFHLHQD LHKCPSWEID WDSILS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650400.0AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148534.15e-82ethylene-responsive transcription factor RAP2-13-like
TrEMBLF2DMC21e-109F2DMC2_HORVV; Predicted protein
STRINGMLOC_18164.11e-110(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-19related to AP2 4