PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18177.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 217aa    MW: 22531.4 Da    PI: 5.5219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18177.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-0912342246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     + W+ Ia++++ gRt++++k++w++
     MLOC_18177.3 12 R-WAQIAKHLP-GRTDNEVKNFWNS 34
                     4.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.329140IPR017930Myb domain
PfamPF002494.2E-71034IPR001005SANT/Myb domain
SuperFamilySSF466896.16E-81142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-121141IPR009057Homeodomain-like
CDDcd001675.23E-71233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCLVRCDLLR CRWAQIAKHL PGRTDNEVKN FWNSTIKKKL ISQAVGSLHS GNIPSSADLY  60
YNILDGAGQG IAAAGCASLS VLDNAAQAVA TQCPPSSVHN SAAWLGFASQ PLLLPVHGGD  120
LQYAVDGEFI RLCRAADNAY PDNGGPNLLA QEGAADRSCL PAFAEPKGAG AFAADPGMGP  180
VVDFMDAILG SSSTSAASIS SVDSFSANTG MQLHWVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18177.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3729260.0AK372926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3016B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185977.11e-103transcription factor MYB86-like isoform X1
TrEMBLM0V4G11e-157M0V4G1_HORVV; Uncharacterized protein
STRINGMLOC_18177.21e-146(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-15myb domain protein 26