PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18272.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 162aa    MW: 18668.9 Da    PI: 4.8295
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18272.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-10911281954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   F+   ++yps +e+ +LA ++gL+ rq+++WF N R +
  MLOC_18272.1  91 FNHflDPYPSDNEKLRLAVSTGLSRRQISNWFINARVR 128
                   5544589*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.22869132IPR001356Homeobox domain
SMARTSM003894.2E-1171136IPR001356Homeobox domain
CDDcd000861.58E-1173133No hitNo description
SuperFamilySSF466891.15E-1875140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2676138IPR009057Homeodomain-like
PfamPF059206.3E-1889128IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSRAMTRHFG NLRRAILRKL ATLWVVDEDS EEEEEDGDEY DYDPARRQED MVGRLVRRTK  60
QAAAARAAEQ VCKPMRVLPE ESVAVLRAWL FNHFLDPYPS DNEKLRLAVS TGLSRRQISN  120
WFINARVRLW KPMIEEMYAD EFSEDSSAVS SRDDGDAAAS SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-1775136263Homeobox protein Meis2
4xrm_B3e-1775136263Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733880.0AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.11e-66BEL1-like homeodomain protein 3
TrEMBLA0A287MZ361e-113A0A287MZ36_HORVV; Uncharacterized protein
STRINGMLOC_18272.33e-92(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-36BEL1-like homeodomain 11