PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18401.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 768aa    MW: 86133.4 Da    PI: 6.722
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18401.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-2376177199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++
  MLOC_18401.2  76 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESG 168
                   99*****************************7555544..58************************************************..44999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+v+r+
  MLOC_18401.2 169 ELRVGVRRA 177
                   9*****996 PP
2Auxin_resp106.53.1e-35202283183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++tk++F+v+Y+Pr+s+seF+++++k+ +++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg  +ld+  Wp+S WrsLk
  MLOC_18401.2 202 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYTESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 283
                   89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-3869205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-4070191IPR015300DNA-binding pseudobarrel domain
CDDcd100179.77E-2174176No hitNo description
PfamPF023623.1E-2176177IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84376178IPR003340B3 DNA binding domain
SMARTSM010194.2E-2376178IPR003340B3 DNA binding domain
PfamPF065075.9E-32202283IPR010525Auxin response factor
PfamPF023092.7E-5622674IPR033389AUX/IAA domain
SuperFamilySSF542777.06E-14632715No hitNo description
PROSITE profilePS5174526.438638731IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.3E-4656713No hitNo description
PfamPF023092.5E-8679723IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE AATTTTEKSS  60
SATGGTMPAR PAVRSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMTQS PPTQELVAKD  120
LHGMEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRAMRQ  180
LSNIASSVIS SHSMHLGVLA TAWHAINTKT MFTVYYKPRT SRSEFIIPYD KYTESVKNIY  240
SIGTRFKMRF EGEEAPEQRF TGTIVGSDNL DQLWPESSWR SLKVRWDESS TIPRPDRVSP  300
WEIEPASSPP VNPLPLSRAK RSRPNVPPAS PESSVRTKEG ATKADMDCAQ AQRNQNNTVL  360
PGHEQRSNKL TDINDFDATV QKPMVWSTPP PNIGKNNPLT FQQRPSVHNS IQLRRREADF  420
KDASSGAQHF GDSLGFFMQT TFDEAPNRLG SFKNQFQDHS YARQFADPYL FMHQQPSLTV  480
ESSRKMHTEN NELHFWNGPG TVYGNSIDHV QDFRFKEHPS NWLSPQFSRA EQPRVIRPHA  540
SIAPIELEKT TEGSDFKIFG FKVDTASAGF NHLNSPMAAT HEPVLQTQPS VSLDHLQTDC  600
SPEVSLSIAG TTDNEKNIQQ CPQSSKDVQS KSHGASTRSC TKVHKQGVAL GRSVDLSKFV  660
DYDELTAELD KMFDFDGELM SSNKNWQIVY TDNEGDMMLV GDDPWEEFCS MVRKICIYTK  720
EEVQKMNSKP SDARKEEGSV EGDGATEKAH LPVSSDLNSS QLGCVKAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-142130856357Auxin response factor 1
4ldw_A1e-142130856357Auxin response factor 1
4ldw_B1e-142130856357Auxin response factor 1
4ldx_A1e-142130856357Auxin response factor 1
4ldx_B1e-142130856357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18401.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727980.0AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197968.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLM0V4Z00.0M0V4Z0_HORVV; Auxin response factor
STRINGMLOC_18401.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]