PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18441.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 927aa    MW: 102258 Da    PI: 4.2696
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18441.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.81.2e-10250300252
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    kR++f +   e+L+++F  ++yps++ +e LA++lgLt rqV  WF   R
  MLOC_18441.1 250 AKRRQFGPVINERLNQHFTTEQYPSRALKESLAQELGLTFRQVNKWFESTR 300
                   68999999999************************************8766 PP
2Homeobox35.51.7e-117527951356
                   HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   ++L e Fe n+yps++ +e LA++lgLt rqV  WF  +R + +
  MLOC_18441.1 752 QRLHEQFETNPYPSRAVKESLARELGLTFRQVERWFESKRRRLR 795
                   6899************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-11242301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-13242300IPR009057Homeodomain-like
PROSITE profilePS5007113.604246306IPR001356Homeobox domain
SMARTSM003892.7E-9249310IPR001356Homeobox domain
CDDcd000866.73E-11249300No hitNo description
PfamPF000463.8E-8250300IPR001356Homeobox domain
PROSITE profilePS5007114.803737797IPR001356Homeobox domain
SMARTSM003891.2E-10740801IPR001356Homeobox domain
CDDcd000861.07E-12742795No hitNo description
SuperFamilySSF466893.72E-12746804IPR009057Homeodomain-like
PfamPF000467.7E-9752795IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-12752806IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MQNDIPDLPS DDSEDDDFDP NISEEHVSGH VEGSSEEEGD EGSDSDDSNF ITSSENSEHV  60
KEKEKVDDLG LPSEDSEDDD YDPEGPDSDK DIEEKQDESD FTSDSDDFCA EITKSCGKDE  120
VSSGPKVGGR TNDLEGAPVR PNTSMSHLTT KDLEIDQDVI LSSRRRQVQQ LDYKKLYDDA  180
YGEAPSDSSD AEEWSGKSTL KEDNEERNEV DSFACKSSRG TRAVHPDSFH GLVNDQHAGG  240
LTSDGSNSKA KRRQFGPVIN ERLNQHFTTE QYPSRALKES LAQELGLTFR QVNKWFESTR  300
HARATAMKNG IQLEKHSNSR KKKSSEVTHM EVSDQPNACK EEGIRQDSPV KQDTDGGQRT  360
HVPPESSQSY TKTSGLVGCP KSESRKNHEK NTSSKYVGIP TDGSAEDQIL GLEREDEGSD  420
SDDLNFVIHS GNSEPLKNRE KVDDLELPSA YSEDDDYDSD EDTENMQQCS DESDADECSD  480
ESDADESNFI TSSDNPEDVK EKVDDLRLPS EDSEDDDYDP AGPDSDEGIG KKQSSSDKSL  540
SSDKSENTKM KKKVDDLGLP SEDSEDDDYH PASPDSDKDI EEKQEDSEDD DFSSDSDDFC  600
DKIAKSCCGR EGVPSGAKVD RDRTNDLEGT TICATAAISN LPSKDAEMGQ YVVLPVSARQ  660
QVQSPDSKKL YAAHGKAPSD LSYSEDLSKK GTPEKDNGKE SEAGSFVNEF TLQRSQQSLH  720
GSVNGQHAEE LLTPNGSSTT GQKRQYGPII NQRLHEQFET NPYPSRAVKE SLARELGLTF  780
RQVERWFESK RRRLRVASSK NSTSVENHSS KETMVENPNI CKSDAVNEDT PSGILNEGIT  840
QDGPLKQDIG GGLRTNVSPQ NSSERYTYPL VKRPKGESRE NHMKNTSSSG AGRPEGSDAG  900
CVVLALEAVD EKTRDKMLQE LKKRKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1789793KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686280.0AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161929.10.0homeobox protein HOX1A-like
TrEMBLM0V5210.0M0V521_HORVV; Uncharacterized protein
STRINGMLOC_18441.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-13Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain